Dear all,
I was trying to install tidyverse in Rv4.2.1 in Ubuntu 22.2 ans whenever i as trying to install tidyverse I got an error "ERROR: configuration failed for package ‘curl’
* removing ‘/home/rajiv/R/x86_64-pc-linux-gnu-library/4.2/curl’
Warning in install.packages :
installation of package ‘curl’ had non-zero exit status
* installing *source* package ‘xml2’ ...
** package ‘xml2’ successfully unpacked and MD5 sums checked
** using staged installation
Package libxml-2.0 was not found in the pkg-config search path.
Perhaps you should add the directory containing `libxml-2.0.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libxml-2.0' found
Package libxml-2.0 was not found in the pkg-config search path.
Perhaps you should add the directory containing `libxml-2.0.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libxml-2.0' found
Using PKG_CFLAGS=
Using PKG_LIBS=-lxml2
------------------------- ANTICONF ERROR ---------------------------
Configuration failed because libxml-2.0 was not found. Try installing:
* deb: libxml2-dev (Debian, Ubuntu, etc)
* rpm: libxml2-devel (Fedora, CentOS, RHEL)
* csw: libxml2_dev (Solaris)
If libxml-2.0 is already installed, check that 'pkg-config' is in your
PATH and PKG_CONFIG_PATH contains a libxml-2.0.pc file. If pkg-config
is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
--------------------------------------------------------------------
ERROR: configuration failed for package ‘xml2’
* removing ‘/home/rajiv/R/x86_64-pc-linux-gnu-library/4.2/xml2’
Warning in install.packages :
installation of package ‘xml2’ had non-zero exit status
ERROR: dependency ‘curl’ is not available for package ‘httr’
* removing ‘/home/rajiv/R/x86_64-pc-linux-gnu-library/4.2/httr’
Warning in install.packages :
installation of package ‘httr’ had non-zero exit status
ERROR: dependency ‘httr’ is not available for package ‘gargle’
* removing ‘/home/rajiv/R/x86_64-pc-linux-gnu-library/4.2/gargle’
Warning in install.packages :
installation of package ‘gargle’ had non-zero exit status
ERROR: dependencies ‘httr’, ‘xml2’ are not available for package ‘rvest’
* removing ‘/home/rajiv/R/x86_64-pc-linux-gnu-library/4.2/rvest’
Warning in install.packages :
installation of package ‘rvest’ had non-zero exit status
ERROR: dependencies ‘gargle’, ‘httr’ are not available for package ‘googledrive’
* removing ‘/home/rajiv/R/x86_64-pc-linux-gnu-library/4.2/googledrive’
Warning in install.packages :
installation of package ‘googledrive’ had non-zero exit status
ERROR: dependencies ‘curl’, ‘gargle’, ‘googledrive’, ‘httr’ are not available for package ‘googlesheets4’
* removing ‘/home/rajiv/R/x86_64-pc-linux-gnu-library/4.2/googlesheets4’
Warning in install.packages :
installation of package ‘googlesheets4’ had non-zero exit status
ERROR: dependencies ‘googledrive’, ‘googlesheets4’, ‘httr’, ‘rvest’, ‘xml2’ are not available for package ‘tidyverse’
* removing ‘/home/rajiv/R/x86_64-pc-linux-gnu-library/4.2/tidyverse’
Warning in install.packages :
installation of package ‘tidyverse’ had non-zero exit status
"
#############################################################################
Well, to solve this i googled and got some way thereafter i tried myself. So solution is here:
1. > find("install.packages")
then i got
[1] "package:utils"
2. > sessionInfo()
then i got
R version 4.2.1 (2022-06-23)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 22.10
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.1
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.1
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=de_DE.UTF-8
[4] LC_COLLATE=en_US.UTF-8 LC_MONETARY=de_DE.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=de_DE.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_4.2.1 tools_4.2.1
Unfortunately, tidyverse is not installed.
Well, i again i googled.
3. > utils::install.packages("tidyverse")
I got this error
ERROR: configuration failed for package ‘curl’
* removing ‘/home/rajiv/R/x86_64-pc-linux-gnu-library/4.2/curl’
* installing *source* package ‘xml2’ ...
** package ‘xml2’ successfully unpacked and MD5 sums checked
** using staged installation
Package libxml-2.0 was not found in the pkg-config search path.
Perhaps you should add the directory containing `libxml-2.0.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libxml-2.0' found
Package libxml-2.0 was not found in the pkg-config search path.
Perhaps you should add the directory containing `libxml-2.0.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libxml-2.0' found
Using PKG_CFLAGS=
Using PKG_LIBS=-lxml2
------------------------- ANTICONF ERROR ---------------------------
Configuration failed because libxml-2.0 was not found. Try installing:
* deb: libxml2-dev (Debian, Ubuntu, etc)
* rpm: libxml2-devel (Fedora, CentOS, RHEL)
* csw: libxml2_dev (Solaris)
If libxml-2.0 is already installed, check that 'pkg-config' is in your
PATH and PKG_CONFIG_PATH contains a libxml-2.0.pc file. If pkg-config
is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
--------------------------------------------------------------------
ERROR: configuration failed for package ‘xml2’
* removing ‘/home/rajiv/R/x86_64-pc-linux-gnu-library/4.2/xml2’
ERROR: dependency ‘curl’ is not available for package ‘httr’
* removing ‘/home/rajiv/R/x86_64-pc-linux-gnu-library/4.2/httr’
ERROR: dependency ‘httr’ is not available for package ‘gargle’
* removing ‘/home/rajiv/R/x86_64-pc-linux-gnu-library/4.2/gargle’
ERROR: dependencies ‘httr’, ‘xml2’ are not available for package ‘rvest’
* removing ‘/home/rajiv/R/x86_64-pc-linux-gnu-library/4.2/rvest’
ERROR: dependencies ‘gargle’, ‘httr’ are not available for package ‘googledrive’
* removing ‘/home/rajiv/R/x86_64-pc-linux-gnu-library/4.2/googledrive’
ERROR: dependencies ‘curl’, ‘gargle’, ‘googledrive’, ‘httr’ are not available for package ‘googlesheets4’
* removing ‘/home/rajiv/R/x86_64-pc-linux-gnu-library/4.2/googlesheets4’
ERROR: dependencies ‘googledrive’, ‘googlesheets4’, ‘httr’, ‘rvest’, ‘xml2’ are not available for package ‘tidyverse’
* removing ‘/home/rajiv/R/x86_64-pc-linux-gnu-library/4.2/tidyverse’
The downloaded source packages are in
‘/tmp/RtmpAPocAk/downloaded_packages’
Warning messages:
1: In utils::install.packages("tidyverse") :
installation of package ‘curl’ had non-zero exit status
2: In utils::install.packages("tidyverse") :
installation of package ‘xml2’ had non-zero exit status
3: In utils::install.packages("tidyverse") :
installation of package ‘httr’ had non-zero exit status
4: In utils::install.packages("tidyverse") :
installation of package ‘gargle’ had non-zero exit status
5: In utils::install.packages("tidyverse") :
installation of package ‘rvest’ had non-zero exit status
6: In utils::install.packages("tidyverse") :
installation of package ‘googledrive’ had non-zero exit status
7: In utils::install.packages("tidyverse") :
installation of package ‘googlesheets4’ had non-zero exit status
8: In utils::install.packages("tidyverse") :
installation of package ‘tidyverse’ had non-zero exit status
...................................................................................................................................
4. So, i tried to install Rculr througn Rconsol
> install.packages("RCurl")
and geot this error
ERROR: dependency ‘curl’ is not available for package ‘httr’
* removing ‘/home/rajiv/R/x86_64-pc-linux-gnu-library/4.2/httr’
ERROR: dependency ‘httr’ is not available for package ‘gargle’
* removing ‘/home/rajiv/R/x86_64-pc-linux-gnu-library/4.2/gargle’
ERROR: dependency ‘httr’ is not available for package ‘rvest’
* removing ‘/home/rajiv/R/x86_64-pc-linux-gnu-library/4.2/rvest’
ERROR: dependencies ‘gargle’, ‘httr’ are not available for package ‘googledrive’
* removing ‘/home/rajiv/R/x86_64-pc-linux-gnu-library/4.2/googledrive’
ERROR: dependencies ‘curl’, ‘gargle’, ‘googledrive’, ‘httr’ are not available for package ‘googlesheets4’
* removing ‘/home/rajiv/R/x86_64-pc-linux-gnu-library/4.2/googlesheets4’
ERROR: dependencies ‘googledrive’, ‘googlesheets4’, ‘httr’, ‘rvest’ are not available for package ‘tidyverse’
* removing ‘/home/rajiv/R/x86_64-pc-linux-gnu-library/4.2/tidyverse’
5. Then i tried with linux terminal
6. sudo apt-get update
7. sudo apt-get install libxml2-dev
8. sudo apt-get install r-cran-xml
9. sudo apt-get install libcurl4-openssl-dev r-base
10. R -q -e "install.packages(c('curl'))"
11. sudo apt install r-cran-curl
12. Then again I tried
> utils::install.packages("tidyverse")
and got no error
13. then
> library('tidyverse')
and showed
── Attaching packages ───────────────────────────────────────────────── tidyverse 1.3.2 ──
✔ ggplot2 3.4.1 ✔ purrr 1.0.1
✔ tibble 3.1.8 ✔ dplyr 1.1.0
✔ tidyr 1.3.0 ✔ stringr 1.5.0
✔ readr 2.1.4 ✔ forcats 1.0.0
── Conflicts ──────────────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::filter() masks stats::filter()
✖ dplyr::lag() masks stats::lag()
Hurreyyyyyyyy!!!!!!!!!!!!
So the problem was not with R updated version. Indeed, it was problem with Ubuntu new version 22.2. Hence, you need to install Rcurl through terminal first then try by R consol.
Ubuntu does not allow any progrram directly. It reueirs lib files which were missing in updated version. So, first update ubuntu through terminal and then install lib files.
Refernces:
https://stackoverflow.com/questions/52082543/curl-package-not-available-for-several-r-packages
https://stackoverflow.com/questions/7765429/unable-to-install-r-package-in-ubuntu-11-04
https://stackoverflow.com/questions/20671814/non-zero-exit-status-r-3-0-1-xml-and-rcurl
https://stackoverflow.com/questions/72578482/issues-installing-tidyverse-package
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